FSL source code compiling under Debian.

FSL Feeds not all tasks are passed.

I ended up installing Debian package by the NeuroDebian Team. 

http://neuro.debian.net/pkgs.html


http://neuro.debian.net/pkgs/fsl.html

YEAH!

yingying@yingying-debian:~/opt/fsl_feeds$ time ./RUN all

FSL Evaluation and Example Data Suite v4.1.8

start time = Sun Oct  2 00:55:22 EDT 2011
hostname = yingying-debian
os = Linux yingying-debian 2.6.32-5-amd64 #1 SMP Fri Sep 9 20:23:16 UTC 2011 x86_64 GNU/Linux


/bin/rm -rf /home/yingying/opt/fsl_feeds/results ; mkdir /home/yingying/opt/fsl_feeds/results


Starting PRELUDE & FUGUE at Sun Oct  2 00:55:22 EDT 2011
% error = 0.0
% error = 0.0

Starting SUSAN at Sun Oct  2 00:55:25 EDT 2011
% error = 0.03

Starting SIENAX (including testing BET and FLIRT and FAST) at Sun Oct  2 00:58:37 EDT 2011
checking error on BET:
% error = 0.0
checking error on FLIRT:
% error = 0.0
checking error on FAST:
checking error on single-image binary segmentation:
% error = 0.37
checking error on partial volume images:
% error = 0.28
% error = 0.41
% error = 0.29
checking error on SIENAX volume outputs:
% error = 0.18
% error = 0.11
% error = 0.49
% error = 0.02
% error = 0.51

Starting BET2 at Sun Oct  2 01:19:05 EDT 2011
checking error on T1 brain extraction:
% error = 0.0
checking error on skull and scalp surfaces:
% error = 0.02
% error = 0.03
% error = 0.14

Starting FEAT at Sun Oct  2 01:33:20 EDT 2011
checking error on filtered functional data:
% error = 0.08
checking error on raw Z stat images:
% error = 0.28
% error = 0.17
% error = 0.23
checking error on thresholded Z stat images:
% error = 0.37
% error = 0.3
% error = 0.32
checking error on registration images:
% error = 0.0
% error = 0.0
checking error on position of largest cluster of Talairached zfstat1:
% error = 0.0
% error = 0.0
% error = 0.0
% error = 0.05
% error = 0.1
% error = 0.08

Starting MELODIC at Sun Oct  2 01:45:01 EDT 2011
% error = 0.66

Starting FIRST at Sun Oct  2 01:55:47 EDT 2011
% error = 0.67

Starting FDT (bedpost) at Sun Oct  2 02:07:29 EDT 2011
checking error on bedpost output:
% error = 0.25
% error = 0.01
% error = 0.31
% error = 0.21
% error = 0.07
% error = 0.3
% error = 0.21

Starting FNIRT at Sun Oct  2 02:16:58 EDT 2011
% error = 0.0

All tests passed

end time = Sun Oct  2 02:16:59 EDT 2011


real    81m37.291s
user    43m16.954s
sys    0m57.920s

Worked!